Domain Specific Details

• Engineering: ANSYS Products
  • Log in to Spruce
  • Create an interactive job
  • Load the module for ANSYS Fluids or Structures
  • Executing the ANSYS package of your choice
• Engineering: ANSYS/Forte
  • Overview
  • Features
  • Tutorial
• Engineering: OpenFOAM 10
  • Run OpenFOAM with an interactive job
  • Using ParaView with OpenFoam
• LAMMPS
  • Creating the input file
  • Requesting an interactive job
  • Executing LAMMPS from a batch job
• Bioinformatics: Using Bowtie2
  • 1. Transfer the files
  • 2. Preparing folders
  • 3. Splitting the files
  • 4. Using BSseeker2
  • 4. Checking completion for all jobs
• Visualization: VisIt
  • Introduction
  • Client Installation
  • Running VisIt in the Client/Server Model
• Compiling Planetary Modeling Packages
  • Earth System Modeling Framework (ESMF)
  • Thermosphere Ionosphere Electrodynamics General Circulation Model (TIE-GCM)
  • The Global Ionosphere/Thermosphere Model (GITM)
• NAMD
  • Downloading the input files
  • Preparing the submission script
  • Submitting the job
  • Running NAMD on GPUs
• Bioinformatics: Stacks
  • What is Stacks?
  • Getting the Samples
  • Preparing the SLURM submission script
• Electronic Structure: Orca
  • Levels of Theory
  • The ORCA input file